
B6 Prof. Dr. Peter Hildebrand / Prof. Dr. Patrick Scheerer
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B6: Structural elucidation of the GPCR allosteric machine
We apply complementary in silico and in vitro structural biology methods to obtain insights into the dynamic modulation of G protein coupled receptors by ligands or signal transducers. To address the key question of G protein coupling specificity we investigate the role of the open cytoplasmic crevice of the human β2-adrenoceptor or bovine rhodopsin in selective binding of Gi, Gs or arrestins. We use native and mutant peptides derived from the key binding sites of the Gα subunit (GαCT) or arrestin (finger loop, ArrFL) to elucidate their role in the selective (on/off) switching of downstream signaling pathways. Our long term goal is to obtain high affinity variants of GαCT and ArrFL, enabling modelling, MD simulations and protein X-ray crystallography of complexes of R* with Gi or arrestin.
Selected Publications
- Authors:Ismer J, Rose AS, Tiemann JK, Goede A, Preissner R, Hildebrand PW
Journal:Nucleic Acids Res Year:2016; :Pages:pii: gkw297. [Epub ahead of print].
Title:SL2: an interactive webtool for modeling of missing segments in proteins - Authors:Müller A, Berkmann JC, Scheerer P, Biebermann H, Kleinau G
Journal:PLoS One Year:2016; Volume:11Issue:(12):Pages:e0168260. doi: 10.1371/journal.pone.0168260. eCollection 2016.
Title:Insights into Basal Signaling Regulation, Oligomerization, and Structural Organization of the Human G-Protein Coupled Receptor 83 - Authors:Kalms J, Schmidt A, Frielingsdorf S, van der Linden P, von Stetten D, Lenz O, Carpentier P, Scheerer P.
Journal:Angew Chem Int Ed Engl Year:2016; Volume:55Issue:(18):Pages:5586-90. doi: 10.1002/anie.201508976. Epub 2016 Feb 23.
Title:Krypton Derivatization of an O2 -Tolerant Membrane-Bound [NiFe] Hydrogenase Reveals a Hydrophobic Tunnel Network for Gas Transport - Authors:Sprink T, Ramrath DJ, Yamamoto H, Yamamoto K, Loerke J, Ismer J, Hildebrand PW, Scheerer P, Bürger J, Mielke T, Spahn CM
Journal:Sci Adv Year:2016; Volume:2Issue:(3):Pages:e1501502. doi: 10.1126/sciadv.1501502. eCollection 2016.
Title:Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association - Authors:Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Bürger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CM
Journal:EMBO J Year:2015; Volume:34Issue:(24):Pages:3042-58. doi: 10.15252/embj.201592469..
Title:Molecular architecture of the ribosome-bound Hepatitis C Virus internal ribosomal entry site RNA - Authors:Behrmann E, Loerke J, Budkevich TV, Yamamoto K, Schmidt A, Penczek PA, Vos MR, Bürger J, Mielke T, Scheerer P, Spahn CM
Journal:Cell Year:2015; Volume:161Issue:(4):Pages:845-57.
Title:Structural snapshots of actively translating human ribosomes - Authors:Barucker C, Bittner HJ, Chang PK, Cameron S, Hancock MA, Liebsch F, Hossain S, Harmeier A, Shaw H, Charron FM, Gensler M, Dembny P, Zhuang W, Schmitz D, Rabe JP, Rao Y, Lurz R, Hildebrand PW, McKinney RA, Multhaup G
Journal:Sci Rep Year:2015; Volume:5:Pages:15410. doi: 10.1038/srep15410.
Title:Aβ42-oligomer Interacting Peptide (AIP) neutralizes toxic amyloid-β42 species and protects synaptic structure and function - Authors:Brehm A, Liu Y, Sheikh A, Marrero B, Omoyinmi E, Zhou Q, Montealegre G, Biancotto A, Reinhardt A, Almeida de Jesus A, Pelletier M, Tsai WL, Remmers EF, Kardava L, Hill S, Kim H, Lachmann HJ, Megarbane A, Chae JJ, Brady J, Castillo RD, Brown D, Casano AV, Gao L, Chapelle D, Huang Y, Stone D, Chen Y, Sotzny F, Lee CC, Kastner DL, Torrelo A, Zlotogorski A, Moir S, Gadina M, McCoy P, Wesley R, Rother K, Hildebrand PW, Brogan P, Krüger E, Aksentijevich I, Goldbach-Mansky R
Journal:J Clin Invest Year:2015; Volume:26Issue:(2):Pages:795. doi: 10.1172/JCI86020. Epub 2016 Feb 1.
Title:Additive loss-of-function proteasome subunit mutations in CANDLE/PRAAS patients promote type I IFN production - Authors:Oestereich F, Bittner HJ, Weise C, Grohmann L, Janke LK, Hildebrand PW, Multhaup G, Munter LM
Journal:Biochemistry Year:2015; Volume:54Issue:(17):Pages:2777-84.
Title:Impact of amyloid precursor protein hydrophilic transmembrane residues on amyloid-beta generation - Authors:Rose AS, and Hildebrand PW
Journal:Nucleic Acids Res Year:2015; Volume:43Issue:(W1):Pages:W576-W579.
Title:NGL Viewer: a web application for molecular visualization - Authors:Prade E., Bittner H.J., Sarkar R., Amo J.M.L., Althoff-Ospelt G., Hildebrand P.W. and Reif B
Journal:JBC Year:2015; Volume:290Issue:(48):Pages:28737-45. doi: 10.1074/jbc.M115.675215.
Title:Structural mechanism of the interaction of Alzheimer's disease Aβ fibrils with the NSAID sulindac sulfide - Authors:Rose AS, and Hildebrand PW
Journal:Nucleic Acids Res Year:2015; Volume:43Issue:(W1):Pages:W576-W579.
Title:NGL Viewer: a web application for molecular visualization - Authors:Sommer ME, Elgeti M, Hildebrand PW, Szczepek M, Hofmann KP, Scheerer P
Journal:Methods Enzymol Year:2015; Volume:556:Pages:563-608.
Title:Structure-based biophysical analysis of the interaction of rhodopsin with g protein and arrestin - Authors:Alexander S. Rose, Ulrich Zachariae, Helmut Grubmüller, Klaus Peter Hofmann, Patrick Scheerer, Peter W. Hildebrand
Journal:PLoS One Year:2015; Volume:10Issue:(11):Pages:e0143399. doi: 10.1371/journal.pone.0143399. eCollection 2015.
Title:Role of Structural Dynamics at the Receptor G Protein Interface for Signal Transduction - Authors:Kazmin R, Rose A, Szczepek M, Elgeti M, Ritter E, Piechnick R, Hofmann KP, Scheerer P, Hildebrand PW, Bartl FJ
Journal:J Biol Chem Year:2015; Volume:290Issue:(33):Pages:):20117-27. doi: 10.1074/jbc.M115.652172.
Title:The Activation Pathway of Human Rhodopsin in Comparison to Bovine Rhodopsin - Authors:Szczepek M, Beyrière F, Hofmann KP, Elgeti M, Kazmin R, Rose A, Bartl FJ, von Stetten D, Heck M, Sommer ME, Hildebrand PW, Scheerer P
Journal:Nat Commun Year:2014; Volume:5Issue:(4801):Pages:doi: 10.1038/ncomms5801.
Title:Crystal structure of a common GPCR-binding interface for G protein and arrestin - Authors:Budkevich, T, Giesebrecht, J, Ramrath, D, Mielke, T, Ismer J, Hildebrand, P, Tung, C-S, Nierhaus, KH, Sanbonmatsu, KY and Spahn, CM
Journal:Cell Year:2014; Volume:158Issue:(1):Pages:121-131.
Title:Regulation of the Mammalian elongation cycle by subunit rolling: a eukaryotic-specific ribosome rearrangement - Authors:Rose AS, Elgeti M, Zachariae U, Grubmüller H, Hofmann KP, Scheerer P, Hildebrand PW
Journal:J Am Chem Soc Year:2014; Volume:136Issue:(32):Pages:11244-11247.
Title:Position of Transmembrane Helix 6 Determines Receptor G Protein Coupling Specificity - Authors:Elgeti M, Rose AS, Bartl FJ, Hildebrand PW, Hofmann KP, Heck M
Journal:J Am Chem Soc Year:2013; Volume:21Issue:(135):Pages:12305-12.
Title:Precision vs Flexibility in GPCR signaling - Authors:Yong Ju Kim, Klaus Peter Hofmann, Oliver P. Ernst, Patrick Scheerer, Hui-Woog Choe & Martha E. Sommer
Journal:Nature Year:2013; Volume:497Issue:(7447):Pages:142-6.
Title:Crystal structure of pre-activated arrestin p44 - Authors:Ismer, J., Rose, A., Goede, A., Johanna K. S. Tiemann, Rother, K. and Hildebrand, P.W.
Journal:Nucleic Acids Res Year:2013; Volume:41:Pages:D280-4. doi: 10.1093/nar/gks1061.
Title:Voronoia4RNA – A database of atomic packing densities of RNA structures and their complexes - Authors:Ramrath D, Yamamoto H, Rother K, Wittek D, Pech M, Mielke T, Loerke J, Scheerer P, Ivanov P, Teraoka Y, Shpanchenko O, Nierhaus K, Spahn CM
Journal:Nature Year:2012; Volume:485Issue:(7399):Pages:526-9.
Title:The complex of tmRNA-SmpB and EF‐G on translocating ribosomes - Authors:Kaden,D., Harmeier,A., Weise,C., Munter,L.M., Althoff,V., Rost,B.R., Hildebrand,P.W., Schmitz,D., Schaefer,M., Lurz,R., et al.
Journal:EMBO Mol Med Year:2012; Volume:7:Pages:647-59.
Title:Novel APP/Aβ mutation K16N produces highly toxic heteromeric Aβ oligomers - Authors:Piechnick, R., Ritter, E., Hildebrand, P.W., Ernst, O.P., Scheerer, P., Hofmann, K. and Heck, M.
Journal: Proc Natl Acad Sci U S A Year:2012; Volume:109Issue:(14):Pages:5247-52.
Title:Effect of channel mutations on the uptake and release of the retinal ligand in opsin - Authors:Botev A, Munter LM, Wenzel R, Richter L, Althoff V, Ismer J, Gerling U, Weise C, Koksch B, Hildebrand PW, Bittl R, Multhaup G
Journal:Biochemistry Year:2011; Volume:50:Pages:828-835.
Title:The Amyloid Precursor Protein C-Terminal Fragment C100 Occurs in Monomeric and Dimeric Stable Conformations and Binds gamma-Secretase Modulators - Authors:Fritsch J, Scheerer P, Frielingsdorf S, Kroschinsky S, Friedrich B, Lenz O, Spahn CM
Journal:Nature Year:2011; Volume:479Issue:(7372):Pages:249-52.
Title:The crystal structure of an oxygen-tolerant hydrogenase uncovers a novel iron-sulphur centre - Authors:Elgeti M, Kazmin R, Heck M, Morizumi T, Ritter E, Scheerer P, Ernst OP, Siebert F, Hofmann KP, Bartl FJ
Journal:J Am Chem Soc Year:2011; Volume:133Issue:(18):Pages:7159-65.
Title:Conserved Tyr223(5.58) plays different roles in the activation and G-protein interaction of rhodopsin - Authors:Muhs M, Yamamoto H, Ismer J, Takaku H, Nashimoto M, Uchiumi T, Nakashima N, Mielke T, Hildebrand PW, Nierhaus KH, Spahn CM
Journal:Nucleid Acids Research Year:2011; Volume:39Issue:(12):Pages:5264-75.
Title:Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit. Nucleic Acids Res. - Authors:Hui-Woog Choe, Yong Ju Kim, Jung Hee Park, Takefumi Morizumi, Emil F. Pai, Norbert Krauß, Klaus Peter Hofmann, Patrick Scheerer & Oliver P. Ernst
Journal:Nature Year:2011 Mar 9; Volume:471Issue:(7340):Pages:651-5.
Title:Crystal structure of metarhodopsin II