Publications
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Publications
Authors:Czarna A., Berndt A., Singh H.R., Grudziecki A., Ladurner A.G., Timinszky G., Kramer A. & Wolf E
Title:Structures of Drosophila cryptochrome and mouse cryptochrome1 provide insight into circadian function
Journal:Cell Year:2013; Volume:153:Pages:1394-405.
Authors:Prade E., Bittner H.J., Sarkar R., Amo J.M.L., Althoff-Ospelt G., Hildebrand P.W. and Reif B
Title:Structural mechanism of the interaction of Alzheimer's disease Aβ fibrils with the NSAID sulindac sulfide
Journal:JBC Year:2015; Volume:290Issue:(48):Pages:28737-45. doi: 10.1074/jbc.M115.675215.
Authors:von Delbrück M, Kniss A, Rogov VV, Pluska L, Bagola K, Löhr F, Güntert P, Sommer T, Dötsch V
Title:The CUE domain of Cue1 aligns growing ubiquitin chains with Ubc7 for rapid elongation
Journal:Mol Cell Year:2016; Volume:62Issue:(6):Pages:918-928. doi: 10.1016/j.molcel.2016.04.031. Epub 2016 Jun 2.
Authors:Schöneberg J and Noé F
Title:ReaDDy - a software for particle based reaction diffusion dynamics in crowded cellular environments
Journal:PLoS ONE Year:2013; Volume:8Issue:(9):Pages:e74261.
Authors:Rose AS, and Hildebrand PW
Title:NGL Viewer: a web application for molecular visualization
Journal:Nucleic Acids Res Year:2015; Volume:43Issue:(W1):Pages:W576-W579.
Authors:Arumughan A, Roske Y, Barth C, Forero LL, Bravo-Rodriguez K, Redel A, Kostova S, McShane E, Opitz R, Faelber K, Rau K, Mielke T, Daumke O, Selbach M, Sanchez-Garcia E, Rocks O, Panáková D, Heinemann U,4, Wanker EE
Title:Quantitative interaction mapping reveals an extended UBX domain in ASPL that disrupts functional p97 hexamers
Journal:Nat Commun. Year:2016; Volume:7:Pages:13047. doi: 10.1038/ncomms13047.
Authors:Wieffer, M., Cibrián Uhalte, E., Posor, Y., Otten, C., Branz, K., Schütz, I., Mössinger, J., Schu, P., Abdelilah-Seyfried, S., Krauß, M., Haucke, V
Title:PI4K2b/ AP-1-based TGN-endosomal sorting regulates Wnt signaling
Journal:Curr Biol Year:2013; Volume:23Issue:(21):Pages:2185-90.
Authors:Schror, M. and Mey, A.S.J.S. and Noé, F. and MacPhee, C
Title:Shedding Light on the Dock-Lock Mechanism in Amyloid Fibril Growth Using Markov State Models
Journal:J Phys Chem Lett Year:2015; Volume:6Issue:(6):Pages:1076-81. doi: 10.1021/acs.jpclett.5b00330.
Authors:Goldenbogen B, Giese W, Hemmen M, Uhlendorf J, Herrmann A, Klipp E
Title:Dynamics of cell wall elasticity pattern shapes the cell during yeast mating morphogenesis
Journal:Open Biol Year:2016; Volume:6Issue:(9):Pages:pii: 160136. doi: 10.1098/rsob.160136.
Authors:Weber G, Cristão VF, Santos KF, Jovin SM, Heroven AC, Holton N, Lührmann R, Beggs JD, Wahl MC
Title:Structural basis for dual roles of Aar2p in U5 snRNP assembly
Journal:Genes Dev Year:2013; Volume:27Issue:(5)
Authors:Biedermann J, Ullrich A, Schöneberg J, Noé F
Title:ReaDDyMM: Fast interacting particle reaction-diffusion simulations using graphical processing units
Journal:Biophys J Year:2015; Volume:108Issue:(3):Pages:457-61. doi: 10.1016/j.bpj.2014.12.025.
Authors:Mozaffari-Jovin S, Wandersleben T, Santos KF, Will CL, Lührmann R, Wahl MC
Title:Inhibition of RNA helicase Brr2 by the C-terminal tail of the spliceosomal protein Prp8
Journal:Science Year:2013; Volume:341:Pages:6141.
Authors:Sprink T, Ramrath DJ, Yamamoto H, Yamamoto K, Loerke J, Ismer J, Hildebrand PW, Scheerer P, Bürger J, Mielke T, Spahn CM
Title:Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Journal:Sci Adv Year:2016; Volume:2Issue:(3):Pages:e1501502. doi: 10.1126/sciadv.1501502. eCollection 2016.
Authors:Mansour, W., Nakasone, M.A., von Delbrueck, M., Yu, Z., Krutauz, D., Reis, N., Kleifeld, O., Sommer, T., Fushman, D., and Glickman, M.H
Title:Disassembly of Lys11 and mixed linkage polyubiquitin conjugates provides insights into function of proteasomal deubiquitinases Rpn11 and Ubp6
Journal:J Biol Chem Year:2015; Volume:290Issue:(8):Pages:4688-704. doi: 10.1074/jbc.M114.568295.
Authors:Fröhlich C., Grabiger S., Schwefel D., Faelber K., Rosenbaum E., Mears J., Rocks O., Daumke O
Title:Structural insights into oligomerization and mitochondrial remodelling of dynamin 1-like protein
Journal:EMBO J Year:2013; Volume:32Issue:(9):Pages:1280-92.
Authors:Kalms J, Schmidt A, Frielingsdorf S, van der Linden P, von Stetten D, Lenz O, Carpentier P, Scheerer P.
Title:Krypton Derivatization of an O2 -Tolerant Membrane-Bound [NiFe] Hydrogenase Reveals a Hydrophobic Tunnel Network for Gas Transport
Journal:Angew Chem Int Ed Engl Year:2016; Volume:55Issue:(18):Pages:5586-90. doi: 10.1002/anie.201508976. Epub 2016 Feb 23.
Authors:Mehnert, M., Sommermeyer, F., Berger, M., Lakshmipathy, S.K., Gauss, R., Aebi, M., Jarosch, E., and Sommer, T
Title:The interplay of Hrd3 and the molecular chaperone system ensures efficient degradation of malfolded secretory proteins
Journal:Mol Biol Cell Year:2015; Volume:26Issue:(2):Pages:185-94. doi: 10.1091/mbc.E14-07-1202.
Authors:Zhang, G., Fedyunin, I., Valleriani, A., and Ignatova, Z.
Title:FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads
Journal:Nucl Acids Res Year:2012; Volume:40Issue:(11):Pages:doi: 10.1093/nar/gks196.
Authors:Posor Y, Eichhorn-Gruenig M, Puchkov D, Schöneberg J, Ullrich A, Lampe A, Müller R, Zarbakhsh S, Gulluni F, Hirsch E, Krauss M, Schultz C, Schmoranzer J, Noé F, Haucke V
Title:Spatiotemporal control of endocytosis by phosphatidylinositol-3,4-bisphosphate
Journal:Nature Year:2013; Volume:499Issue:(7457):Pages:233-7.
Authors:Ismer J, Rose AS, Tiemann JK, Goede A, Preissner R, Hildebrand PW
Title:SL2: an interactive webtool for modeling of missing segments in proteins
Journal:Nucleic Acids Res Year:2016; :Pages:pii: gkw297. [Epub ahead of print].
Authors:Veit, M
Title:Palmitoylation of virus proteins
Journal:Biology of the Cell Year:2012; Volume:104:Pages:493-515.
Authors:Budkevich, T, Giesebrecht, J, Ramrath, D, Mielke, T, Ismer J, Hildebrand, P, Tung, C-S, Nierhaus, KH, Sanbonmatsu, KY and Spahn, CM
Title:Regulation of the Mammalian elongation cycle by subunit rolling: a eukaryotic-specific ribosome rearrangement
Journal:Cell Year:2014; Volume:158Issue:(1):Pages:121-131.
Authors:Rost BR, Schneider F, Grauel MK, Wozny C, Bentz C, Blessing A, Rosenmund T, Jentsch TJ, Schmitz D, Hegemann P, Rosenmund C
Title:Optogenetic acidification of synaptic vesicles and lysosomes
Journal:Nat Neurosci Year:2015; Volume:18Issue:(12):Pages:1845-52. doi: 10.1038/nn.4161.
Authors:Petrakis S, Raskó T, Russ J, Friedrich RP, Stroedicke M, Riechers SP, Muehlenberg K, Möller A, Reinhardt A, Vinayagam A, Schaefer MH, Boutros M, Tricoire H, Andrade-Navarro MA, Wanker EE
Title:Identification of human proteins that modify misfolding and proteotoxicity of pathogenic ataxin-1
Journal:PLoS Genet Year:2012; Volume:8:Pages:e1002897. doi: 10.1371.
Authors:Denzel, MS, Storm, NJ, Gutschmidt, A, Baddi, R, Hinze, Y, Jarosch, E, Sommer, T, Hoppe, T, and Antebi, A
Title:Hexosamine pathway metabolites enhance protein quality control and prolong life
Journal:Cell Year:2014; Volume:156Issue:(6):Pages:1167-78.
Authors:Hennings, JC, Picard, N, Huebner, AK, Stauber, T, Maier, H, Brown, D, Jentsch, TJ, Vargas-Poussou, R, Eladari, D, Hübner, CA
Title:A mouse model for distal renal tubular acidosis reveals a previously unrecognized role of the V-ATPase a4 subunit in the proximal tubule
Journal:EMBO Mol Med Year:2012; Volume:4Issue:(10):Pages:1057-1071.
Authors:Warnatsch A, Bergann T, Krüger E.
Title:Oxidation matters: the ubiquitin proteasome system connects innate immune mechanisms with adaptive immunity
Journal:Mol Immunol Year:2012; Volume:Nov 6. pii:Pages: S0161-5890(12)00421-X.
Authors:Penczek, PA, Fang, J, Li, X, Cheng, Y, Loerke, J and Spahn, CM
Title:CTER-rapid estimation of CTF parameters with error assessment
Journal:Ultramicroscopy Year:2014; Volume:140:Pages:9-19.
Authors:Feleciano RD & Kirstein J
Title:Collapse of Redox homeostasis during aging and stress
Journal:Molecular and Cellular Oncology Year:2016;
Authors:Planells-Cases R, Lutter D, Guyader ., Gerhards NM, Ullrich F, Elger DA, Kucukosmanoglu A, Xu G, Voss FK, Reincke SM, Stauber T, Blomen VA, Vis DJ, Wessels LF, Brummelkamp TR, Borst P, Rottenberg S, Jentsch TJ
Title:Subunit composition of VRAC channels determines substrate specificity and cellular resistance to Pt-based anti-cancer drugs
Journal:EMBO J Year:2015; Volume:34Issue:(24):Pages:2993-3008. doi: 10.15252/embj.201592409.
Authors:Ebstein F, Kloetzel PM, Krüger E, and Seifert U.
Title:Emerging roles of immuno-proteasomes beyond MHC class I antigen processing
Journal:Cell Mol Life Sci Year:2012; Volume:69Issue:(15):Pages:2543-58.